Package: dismo 1.3-15

Robert J. Hijmans

dismo: Species Distribution Modeling

Methods for species distribution modeling, that is, predicting the environmental similarity of any site to that of the locations of known occurrences of a species.

Authors:Robert J. Hijmans, Steven Phillips, John Leathwick and Jane Elith

dismo_1.3-15.tar.gz
dismo_1.3-15.zip(r-4.7)dismo_1.3-15.zip(r-4.6)dismo_1.3-15.zip(r-4.5)
dismo_1.3-15.tgz(r-4.6-x86_64)dismo_1.3-15.tgz(r-4.6-arm64)dismo_1.3-15.tgz(r-4.5-x86_64)dismo_1.3-15.tgz(r-4.5-arm64)
dismo_1.3-15.tar.gz(r-4.7-arm64)dismo_1.3-15.tar.gz(r-4.7-x86_64)dismo_1.3-15.tar.gz(r-4.6-arm64)dismo_1.3-15.tar.gz(r-4.6-x86_64)
dismo_1.3-15.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
dismo/json (API)

# Install 'dismo' in R:
install.packages('dismo', repos = c('https://rspatial.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rspatial/dismo/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

cpp

12.29 score 34 stars 26 packages 4.3k scripts 11k downloads 275 mentions 48 exports 5 dependencies

Last updated from:30385aeeca. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK255
linux-devel-x86_64OK275
source / vignettesOK254
linux-release-arm64OK254
linux-release-x86_64OK245
macos-release-arm64OK180
macos-release-x86_64OK495
macos-oldrel-arm64OK253
macos-oldrel-x86_64OK393
windows-develOK301
windows-releaseOK243
windows-oldrelOK230
wasm-releaseOK134

Exports:bioclimbiovarscalc.deviancecircleHullcirclesconvHulldcEvaluatedomainecocropecolimevaluateevaluateROCRgbifgbm.fixedgbm.holdoutgbm.interactionsgbm.perspecgbm.plotgbm.plot.fitsgbm.simplifygbm.stepgeocodegeoDistgeoIDWgetCropgmapgridSamplekfoldmahalmaxentMercatormessnicheEquivalencynicheOverlapnullRandomplotpointspointValuespredictprepareDatapwdSamplerandomPointsrectHullresponsessbthresholdvoronoivoronoiHull

Dependencies:latticerasterRcppspterra

SDM

Rendered fromsdm.Rnwusingutils::Sweaveon Jun 19 2026.

Last update: 2020-11-13
Started: 2018-08-20

Readme and manuals

Help Manual

Help pageTopics
Species distribution modelingdismo-package dismo
Solanum acaule dataacaule
Anguilla australis distribution dataAnguilla_grids Anguilla_test Anguilla_train
Bioclimbioclim bioclim,data.frame,missing-method bioclim,matrix,missing-method bioclim,Raster,data.frame-method bioclim,Raster,matrix-method bioclim,Raster,SpatialPoints-method bioclim,SpatialGridDataFrame,matrix-method bioclim,SpatialGridDataFrame,SpatialPoints-method Bioclim-class
bioclimatic variablesbiovars biovars,matrix,matrix,matrix-method biovars,Raster,Raster,Raster-method biovars,vector,vector,vector-method
Box plot of model evaluation databoxplot,ModelEvaluation-method
Calculate deviancecalc.deviance
Circle hull modelcircleHull circleHull,data.frame-method circleHull,matrix-method circleHull,SpatialPoints-method CircleHull-class
Circles rangecircles circles,data.frame-method circles,matrix-method circles,SpatialPoints-method CirclesRange-class
Convex hull modelConvexHull-class convHull convHull,data.frame-method convHull,matrix-method convHull,SpatialPoints-method
Evaluate by distance classdcEvaluate
densitydensity density,DistModel-method density,ModelEvaluation-method
Class "DistModel"DistModel-class
Domaindomain domain,data.frame,missing-method domain,matrix,missing-method domain,Raster,data.frame-method domain,Raster,matrix-method domain,Raster,SpatialPoints-method Domain-class
Ecocrop modelecocrop ECOCROP-class ECOCROPcrop-class ECOcrops getCrop plot,ECOCROP,missing-method plot,ECOCROPcrop,missing-method
Ecolim modelecolim ecolim,matrix,matrix-method EcoLim-class plot,EcoLim,ANY-method predict,EcoLim-method
Model evaluationevaluate
Model testing with the ROCR packageevaluateROCR
Plot model evaluation dataplot,ModelEvaluation,character-method
Data from GBIFgbif
gbm fixedgbm.fixed
gbm holdoutgbm.holdout
gbm interactionsgbm.interactions
gbm perspective plotgbm.perspec
gbm plotgbm.plot
gbm plot fitted valuesgbm.plot.fits
gbm simplifygbm.simplify
gbm stepgbm.step
Georeferencing with Googlegeocode
Geographic distance modelgeoDist geoDist,data.frame-method geoDist,matrix-method geoDist,SpatialPoints-method GeographicDistance-class
Get a Google mapgmap Mercator
Stratified regular sample on a gridgridSample
Inverse-distance weighted modelgeoIDW geoIDW,data.frame,data.frame-method geoIDW,matrix,matrix-method geoIDW,SpatialPoints,SpatialPoints-method InvDistWeightModel-class
k-fold partitioningkfold
Mahalanobis modelmahal mahal,data.frame,missing-method mahal,matrix,missing-method mahal,Raster,data.frame-method mahal,Raster,matrix-method mahal,Raster,SpatialPoints-method Mahalanobis-class
Maxentmaxent maxent,data.frame,vector-method maxent,missing,missing-method maxent,Raster,ANY-method maxent,SpatialGridDataFrame,ANY-method MaxEnt-class MaxEntReplicates-class
Multivariate environmental similarity surfaces (MESS)mess
Class "ModelEvaluation"ModelEvaluation-class
Niche equivalencynicheEquivalency
Niche overlapnicheOverlap
Pair plotspairs pairs,DistModel-method
Plot predictor valuesplot,Bioclim,missing-method plot,CircleHull,missing-method plot,CirclesRange,missing-method plot,ConvexHull,missing-method plot,DistModel,numeric-method plot,MaxEnt,missing-method plot,RectangularHull,missing-method plot,VoronoiHull,missing-method points,DistModel-method
point valuespointValues
Distribution model predictionspredict predict,Bioclim-method predict,CircleHull-method predict,CirclesRange-method predict,ConvexHull-method predict,Domain-method predict,GeographicDistance-method predict,InvDistWeightModel-method predict,Mahalanobis-method predict,MaxEnt-method predict,MaxEntReplicates-method predict,RectangularHull-method predict,VoronoiHull-method
Prepare data for model fittingprepareData
Pair-wise distance samplingpwdSample
Random null modelnullRandom
Random pointsrandomPoints
Rectangular hull modelRectangularHull-class rectHull rectHull,data.frame-method rectHull,matrix-method rectHull,SpatialPoints-method
response plotsresponse response,ANY-method response,DistModel-method response,MaxEntReplicates-method
Spatial sorting biasssb
Find a thresholdthreshold threshold,ModelEvaluation-method
Voronoi polygonsvoronoi voronoi,ANY-method
Voronoi hull modelvoronoiHull voronoiHull,data.frame,data.frame-method voronoiHull,matrix,matrix-method voronoiHull,SpatialPoints,SpatialPoints-method VoronoiHull-class